MLOC_61797 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.01719.489921.532126.7973
LEAShoots from the seedlings (10 cm shoot stage)16.859218.451522.403617.5794
INF1Young developing inflorescences (5mm)14.323518.370917.364217.0033
INF2Developing inflorescences (1-1.5 cm)26.063521.844126.242131.8248
ROORoots from the seedlings (10 cm shoot stage)51.069128.889244.081846.4466
NODDeveloping tillers at six leaf stage, 3rd internode37.840636.29677.5355135.517
CAR5Developing grain, bracts removed (5 DPA)12.732713.829810.737615.2352
CAR15Developing grain, bracts removed (15 DPA)8.949727.620676.809622.6907



CDS Structure of MLOC_61797






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61797.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251446.1NoneNoneNoneNone
MLOC_61797.1CUST_4523_PI427708080AvailableAvailablecontig_45877 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g40190.1 +2 2e-57 184 87/100 (87%) 13108.m04295 protein expressed protein
TAIR PP10 AT2G33585.1 +2 1e-31 119 55/96 (57%) unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14223403-14224167 REVERSE LENGTH=193