MLOC_6179 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2658730.1502880.1663130.177049
LEAShoots from the seedlings (10 cm shoot stage)0.5255240.4380230.4424080.366622
INF1Young developing inflorescences (5mm)0.08097560.01914030.1990730.0889906
INF2Developing inflorescences (1-1.5 cm)0.01726700.06169580.0412508
ROORoots from the seedlings (10 cm shoot stage)1.423550.9325660.8927150.982393
NODDeveloping tillers at six leaf stage, 3rd internode0.2006890.5111930.6138851.36068
CAR5Developing grain, bracts removed (5 DPA)2.514321.909471.586741.9652
CAR15Developing grain, bracts removed (15 DPA)0.2834150.1921270.08494410.529008



CDS Structure of MLOC_6179






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6179.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6179.1CUST_14332_PI427708080AvailableAvailablecontig_137174 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60850.1 +3 0.0 743 432/568 (76%) 13103.m06685 protein peptide transporter PTR2, putative, expressed
TAIR PP10 AT3G53960.1 +3 0.0 557 324/583 (56%) Major facilitator superfamily protein | chr3:19978306-19980886 REVERSE LENGTH=602