MLOC_61771 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.6505819.492718.375515.7477
LEAShoots from the seedlings (10 cm shoot stage)22.47248.949077.454111.7563
INF1Young developing inflorescences (5mm)33.626332.379930.425225.9655
INF2Developing inflorescences (1-1.5 cm)37.106736.723232.153239.681
ROORoots from the seedlings (10 cm shoot stage)3.323388.237115.473549.36879
NODDeveloping tillers at six leaf stage, 3rd internode25.402525.93214.071591.7491
CAR5Developing grain, bracts removed (5 DPA)22.396921.191725.128322.5869
CAR15Developing grain, bracts removed (15 DPA)17.970514.936416.577736.1947



CDS Structure of MLOC_61771






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61771.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61771.1CUST_14329_PI427708080AvailableAvailablecontig_45852 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g21940.1 -3 0.0 2372 1330/1845 (72%) 13110.m01826 protein expressed protein
TAIR PP10 AT1G22060.1 -3 0.0 677 501/1652 (30%) LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999