MLOC_61672 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.653710.503511.878112.4921
LEAShoots from the seedlings (10 cm shoot stage)9.732677.2939.766057.89512
INF1Young developing inflorescences (5mm)15.4117.487618.292214.8698
INF2Developing inflorescences (1-1.5 cm)15.600215.988218.183318.7709
ROORoots from the seedlings (10 cm shoot stage)11.682710.555412.069814.1265
NODDeveloping tillers at six leaf stage, 3rd internode7.195987.275967.5907725.1416
CAR5Developing grain, bracts removed (5 DPA)11.03569.6857513.282111.6738
CAR15Developing grain, bracts removed (15 DPA)5.774655.615327.2297414.4106



CDS Structure of MLOC_61672






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61672.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359024NoneNoneNoneNone
MLOC_61672.2CUST_4496_PI427708080AvailableAvailablecontig_45740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g19480.1 +3 1e-108 322 159/202 (79%) 13106.m02079 protein expressed protein
TAIR PP10 AT3G04950.1 +3 3e-63 206 103/191 (54%) CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | chr3:1371786-1373300 FORWARD LENGTH=231