- Predicted Gene MLOC_61578
MLOC_61578 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.935293 | 1.63125 | 1.5504 | 1.22573 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.623738 | 0 | 0.0559842 | 0.15334 |
INF1 | Young developing inflorescences (5mm) | 8.34692 | 9.3706 | 8.33027 | 6.97145 |
INF2 | Developing inflorescences (1-1.5 cm) | 11.2435 | 12.2061 | 9.15709 | 11.9606 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.800651 | 1.20583 | 1.0224 | 1.07272 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.596284 | 0.874686 | 0.857219 | 2.24707 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.98404 | 3.33398 | 3.1514 | 2.9426 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.824976 | 0.512846 | 0.767057 | 1.50217 |
CDS Structure of MLOC_61578
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_61578.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g05440.1 |
-2 |
0.0 |
1039 |
669/1224 (55%) |
13105.m00567 protein expressed protein |
TAIR PP10 |
AT3G21480.1 |
-2 |
3e-96 |
335 |
310/1034 (30%) |
BRCT domain-containing DNA repair protein | chr3:7567730-7571990 FORWARD LENGTH=1041 |