MLOC_61558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.132399.697912.8272211.7635
LEAShoots from the seedlings (10 cm shoot stage)100.774214.389118.796205.391
INF1Young developing inflorescences (5mm)1.199520.8502190.4489791.12688
INF2Developing inflorescences (1-1.5 cm)0.1953550.4435140.1288250.616417
ROORoots from the seedlings (10 cm shoot stage)0.473782.438065.374395.34774
NODDeveloping tillers at six leaf stage, 3rd internode5.910575.144495.1608827.1659
CAR5Developing grain, bracts removed (5 DPA)28.921922.568919.878537.0648
CAR15Developing grain, bracts removed (15 DPA)14.803511.050313.336643.0024



CDS Structure of MLOC_61558






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61558.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61558.1CUST_14293_PI427708080AvailableAvailablecontig_456277 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g21268.1 -1 1e-144 417 198/206 (96%) 13110.m07703 protein ribulose bisphosphate carboxylase large chain precursor, putative, expressed
TAIR PP10 ATCG00490.1 -1 3e-141 407 193/206 (94%) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479