MLOC_61547 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.169471.028681.028371.10492
LEAShoots from the seedlings (10 cm shoot stage)1.970210.2320621.249340.887856
INF1Young developing inflorescences (5mm)0.1314050.05413640.08225290.0826224
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.7471210.3251110.7524060.474114
NODDeveloping tillers at six leaf stage, 3rd internode6.356510.774327.833638.7011
CAR5Developing grain, bracts removed (5 DPA)0.4092920.6074810.5675970.612235
CAR15Developing grain, bracts removed (15 DPA)0.8678650.879450.6737462.27065



CDS Structure of MLOC_61547






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61547.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61547.1CUST_14289_PI427708080AvailableAvailablecontig_45620 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30100.1 +1 7e-97 301 182/291 (63%) 13108.m03115 protein 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
TAIR PP10 AT1G06620.1 +1 2e-80 257 158/321 (49%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365