MLOC_61544 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.479373.562454.079374.04453
LEAShoots from the seedlings (10 cm shoot stage)34.858147.509664.091137.8886
INF1Young developing inflorescences (5mm)4.160064.094814.539783.64964
INF2Developing inflorescences (1-1.5 cm)2.851432.914632.832553.25172
ROORoots from the seedlings (10 cm shoot stage)0.4995241.186511.726641.28943
NODDeveloping tillers at six leaf stage, 3rd internode20.858926.083435.769974.7826
CAR5Developing grain, bracts removed (5 DPA)4.19425.437335.019095.07742
CAR15Developing grain, bracts removed (15 DPA)0.3193940.4096370.3251810.908664



CDS Structure of MLOC_61544






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61544.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360199NoneNoneNoneNone
MLOC_61544.2CUST_4483_PI427708080AvailableAvailablecontig_45614 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33520.1 +3 3e-92 281 136/154 (88%) 13105.m03467 protein expressed protein
TAIR PP10 AT2G48070.2 +3 4e-79 245 115/150 (77%) | Symbols: RPH1 | resistance to phytophthora 1 | chr2:19662863-19663773 FORWARD LENGTH=197