MLOC_61500 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.675173.956674.890675.40904
LEAShoots from the seedlings (10 cm shoot stage)4.035793.344214.676433.44922
INF1Young developing inflorescences (5mm)2.086292.781072.340672.36372
INF2Developing inflorescences (1-1.5 cm)2.396612.21492.204132.8346
ROORoots from the seedlings (10 cm shoot stage)17.56349.0790210.53212.6709
NODDeveloping tillers at six leaf stage, 3rd internode3.559578.7438413.695529.6131
CAR5Developing grain, bracts removed (5 DPA)2.586263.415842.714373.40006
CAR15Developing grain, bracts removed (15 DPA)1.474771.304661.274743.71105



CDS Structure of MLOC_61500






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61500.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376274NoneNoneNoneNone
MLOC_61500.3CUST_4476_PI427708080AvailableAvailablecontig_45573 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g38940.1 -2 1e-122 358 219/254 (86%) 13104.m03755 protein integral membrane protein, putative, expressed
TAIR PP10 AT2G01770.1 -2 1e-98 296 155/211 (73%) | Symbols: VIT1, ATVIT1 | vacuolar iron transporter 1 | chr2:334775-336425 REVERSE LENGTH=250