MLOC_61499 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9102110.8085250.7764980.85459
LEAShoots from the seedlings (10 cm shoot stage)0.4567630.1953520.196710.255175
INF1Young developing inflorescences (5mm)1.366011.831811.685081.44855
INF2Developing inflorescences (1-1.5 cm)1.148521.172740.8875681.24917
ROORoots from the seedlings (10 cm shoot stage)0.2429080.4631890.5090810.560099
NODDeveloping tillers at six leaf stage, 3rd internode0.04829780.04618070.1652890.236781
CAR5Developing grain, bracts removed (5 DPA)0.5224470.4096810.8013020.575413
CAR15Developing grain, bracts removed (15 DPA)0.3871260.2665960.2933960.787157



CDS Structure of MLOC_61499






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61499.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61499.1CUST_14283_PI427708080AvailableAvailablecontig_45573 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g38930.1 +3 0.0 611 315/439 (72%) 13104.m03754 protein pentatricopeptide, putative, expressed
TAIR PP10 AT1G09680.1 +3 2e-126 394 206/438 (47%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:3134107-3135930 REVERSE LENGTH=607