MLOC_61487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.038945.203464.464884.60464
LEAShoots from the seedlings (10 cm shoot stage)2.264771.772222.914161.70988
INF1Young developing inflorescences (5mm)5.29146.630685.902954.81716
INF2Developing inflorescences (1-1.5 cm)5.168075.774444.963195.52838
ROORoots from the seedlings (10 cm shoot stage)4.52764.014598.18634.67245
NODDeveloping tillers at six leaf stage, 3rd internode1.128121.477532.579784.16322
CAR5Developing grain, bracts removed (5 DPA)3.994196.620825.120184.88788
CAR15Developing grain, bracts removed (15 DPA)1.023431.421760.8015182.63454



CDS Structure of MLOC_61487






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61487.1CUST_14282_PI427708080AvailableAvailablecontig_45560 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g64190.1 -2 2e-27 107 46/51 (90%) 13101.m06908 protein expressed protein
TAIR PP10 AT5G09270.2 -2 7e-15 72 29/50 (58%) unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2879680-2880015 FORWARD LENGTH=111