MLOC_61462 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.01783980.01589230.01201070.0274846
LEAShoots from the seedlings (10 cm shoot stage)0.0143161000.0179104
INF1Young developing inflorescences (5mm)00.0080337700.0239269
INF2Developing inflorescences (1-1.5 cm)00.006367660.03712390.0459447
ROORoots from the seedlings (10 cm shoot stage)00.01779100.064137
NODDeveloping tillers at six leaf stage, 3rd internode0.01402870.002274020.007533720.0163272
CAR5Developing grain, bracts removed (5 DPA)10.4558.989278.751168.85555
CAR15Developing grain, bracts removed (15 DPA)26.282424.674226.367256.726



CDS Structure of MLOC_61462






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61462.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61462.1CUST_14276_PI427708080AvailableAvailablecontig_45528 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05860.1 -2 0.0 2717 1354/1513 (89%) 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT4G35800.1 -2 0.0 2630 1294/1518 (85%) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839