MLOC_61457 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains279.5204.137213.22244.98
LEAShoots from the seedlings (10 cm shoot stage)176.461115.835178.195140.778
INF1Young developing inflorescences (5mm)173.293206.383199.176178.236
INF2Developing inflorescences (1-1.5 cm)159.243220.94202.282236.289
ROORoots from the seedlings (10 cm shoot stage)281.255224.117199.766294.375
NODDeveloping tillers at six leaf stage, 3rd internode256.264270.406186.269896.768
CAR5Developing grain, bracts removed (5 DPA)270.701296.228262.724302.548
CAR15Developing grain, bracts removed (15 DPA)105.78192.133273.9041231.711



CDS Structure of MLOC_61457






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61457.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK377161NoneNoneNoneNone
MLOC_61457.1CUST_4467_PI427708080AvailableAvailablecontig_45520 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g36974.4 -3 2e-173 493 250/262 (95%) 13102.m04047 protein 14-3-3 protein, putative, expressed
TAIR PP10 AT3G02520.1 -3 1e-146 423 213/256 (83%) | Symbols: GRF7, GF14 NU | general regulatory factor 7 | chr3:526800-527915 REVERSE LENGTH=265