MLOC_61394 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.936395.75325.516126.33664
LEAShoots from the seedlings (10 cm shoot stage)7.49127.547225.907966.59082
INF1Young developing inflorescences (5mm)9.864169.3140312.05519.36158
INF2Developing inflorescences (1-1.5 cm)15.365314.079315.145117.2147
ROORoots from the seedlings (10 cm shoot stage)2.874026.825423.300358.07369
NODDeveloping tillers at six leaf stage, 3rd internode7.9891512.354418.637448.9999
CAR5Developing grain, bracts removed (5 DPA)9.245610.435212.007910.8353
CAR15Developing grain, bracts removed (15 DPA)5.626176.100935.5606714.0137



CDS Structure of MLOC_61394






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61394.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61394.1CUST_8401_PI427708083AvailableAvailablecontig_45453 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g27060.1 -2 4e-112 345 196/219 (89%) 13109.m02626 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT5G66750.1 -2 2e-82 265 147/221 (67%) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764