MLOC_61346 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.1715321.149816.55516.2702
LEAShoots from the seedlings (10 cm shoot stage)21.462316.150214.322315.2155
INF1Young developing inflorescences (5mm)45.112647.560140.951336.7008
INF2Developing inflorescences (1-1.5 cm)52.605154.175946.971656.6094
ROORoots from the seedlings (10 cm shoot stage)6.906614.274710.334915.9087
NODDeveloping tillers at six leaf stage, 3rd internode7.3415511.275114.126739.5793
CAR5Developing grain, bracts removed (5 DPA)40.799238.266138.711638.3055
CAR15Developing grain, bracts removed (15 DPA)44.819838.361940.447391.4126



CDS Structure of MLOC_61346






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61346.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61346.2CUST_17777_PI427708080AvailableAvailablecontig_45402 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g08480.1 -1 0.0 1070 571/656 (87%) 13106.m00885 protein CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
TAIR PP10 AT2G25170.1 -1 0.0 942 490/757 (65%) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384