MLOC_61292 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08466920.1080050.06384650.095111
LEAShoots from the seedlings (10 cm shoot stage)0.406790.2808020.2347980.247887
INF1Young developing inflorescences (5mm)3.509853.505664.698313.05228
INF2Developing inflorescences (1-1.5 cm)3.709564.250053.866984.05833
ROORoots from the seedlings (10 cm shoot stage)0.1977440.2602970.7576230.31352
NODDeveloping tillers at six leaf stage, 3rd internode8.599083.726195.3397610.5978
CAR5Developing grain, bracts removed (5 DPA)0.06640080.06242920.09144770.0647687
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_61292






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61292.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249018.1NoneNoneNoneNone
MLOC_61292.1CUST_13515_PI427708083AvailableAvailablecontig_45349 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g03100.1 +3 3e-29 115 57/61 (93%) 13103.m00285 protein OsMADS50 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT2G45660.1 +3 3e-26 109 54/64 (84%) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214