MLOC_61260 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.406357.455216.237417.62105
LEAShoots from the seedlings (10 cm shoot stage)72.767170.479193.69130.427
INF1Young developing inflorescences (5mm)7.697826.83165.977256.38535
INF2Developing inflorescences (1-1.5 cm)3.796363.737553.145324.33278
ROORoots from the seedlings (10 cm shoot stage)1.253971.62662.80062.23761
NODDeveloping tillers at six leaf stage, 3rd internode28.817834.453234.2012100.132
CAR5Developing grain, bracts removed (5 DPA)10.004814.201510.312112.9899
CAR15Developing grain, bracts removed (15 DPA)1.595992.064682.331315.18122



CDS Structure of MLOC_61260






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61260.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359534NoneNoneNoneNone
MLOC_61260.1CUST_4435_PI427708080AvailableAvailablecontig_45320 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g45190.1 +3 5e-63 199 107/124 (86%) 13108.m04930 protein PGR5, putative, expressed
TAIR PP10 AT2G05620.1 +3 1e-44 151 80/111 (72%) | Symbols: PGR5 | proton gradient regulation 5 | chr2:2081204-2081687 REVERSE LENGTH=133