MLOC_61177 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.254811.464213.126312.6193
LEAShoots from the seedlings (10 cm shoot stage)15.29129.060048.654299.78767
INF1Young developing inflorescences (5mm)27.042731.812930.435424.399
INF2Developing inflorescences (1-1.5 cm)34.794333.67228.936635.3724
ROORoots from the seedlings (10 cm shoot stage)9.2619813.143911.623914.7933
NODDeveloping tillers at six leaf stage, 3rd internode16.730429.448734.1989101.784
CAR5Developing grain, bracts removed (5 DPA)15.657914.388515.024714.2706
CAR15Developing grain, bracts removed (15 DPA)3.502624.274843.645048.47633



CDS Structure of MLOC_61177






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61177.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61177.1CUST_14244_PI427708080AvailableAvailablecontig_45192 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g41290.1 -3 3e-175 520 257/281 (91%) 13112.m04308 protein Spc97 / Spc98 family protein, putative, expressed
TAIR PP10 AT1G80260.1 -3 4e-125 387 184/282 (65%) | Symbols: emb1427 | Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30175924-30180511 FORWARD LENGTH=995