MLOC_61171 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.745110.70439.5518311.8406
LEAShoots from the seedlings (10 cm shoot stage)19.695527.156738.211825.5441
INF1Young developing inflorescences (5mm)5.45384.781494.852964.72009
INF2Developing inflorescences (1-1.5 cm)6.78215.628814.819417.06868
ROORoots from the seedlings (10 cm shoot stage)17.777512.59211.913417.3147
NODDeveloping tillers at six leaf stage, 3rd internode16.335432.16315.498495.2842
CAR5Developing grain, bracts removed (5 DPA)17.168220.249314.565719.4918
CAR15Developing grain, bracts removed (15 DPA)5.862815.606284.973414.7216



CDS Structure of MLOC_61171






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61171.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61171.1CUST_14243_PI427708080AvailableAvailablecontig_45177 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g55880.1 -3 7e-99 296 146/168 (87%) 13102.m06415 protein EF hand family protein, putative, expressed
TAIR PP10 AT3G18430.2 -3 6e-80 247 119/168 (71%) Calcium-binding EF-hand family protein | chr3:6326180-6327476 FORWARD LENGTH=175