MLOC_61059 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.028512.764711.347912.2032
LEAShoots from the seedlings (10 cm shoot stage)4.112573.93446.434563.47895
INF1Young developing inflorescences (5mm)8.513589.703210.04776.21604
INF2Developing inflorescences (1-1.5 cm)5.991815.121654.567234.89176
ROORoots from the seedlings (10 cm shoot stage)18.42228.679689.4787910.9207
NODDeveloping tillers at six leaf stage, 3rd internode8.0036410.55478.7490129.5019
CAR5Developing grain, bracts removed (5 DPA)4.922956.546066.349374.75116
CAR15Developing grain, bracts removed (15 DPA)1.676061.991732.028113.40387



CDS Structure of MLOC_61059






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61059.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61059.1CUST_12875_PI427708083AvailableAvailablecontig_45048 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g29670.1 -3 2e-38 133 65/75 (87%) 13112.m03018 protein expressed protein
TAIR PP10 AT1G21930.1 -3 8e-31 113 55/75 (73%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7713466-7714298 FORWARD LENGTH=98