MLOC_61052 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.9021812.740110.16559.11006
LEAShoots from the seedlings (10 cm shoot stage)8.772877.479624.211875.68087
INF1Young developing inflorescences (5mm)44.865342.838636.115932.7182
INF2Developing inflorescences (1-1.5 cm)32.702133.462629.789832.5348
ROORoots from the seedlings (10 cm shoot stage)4.139679.898087.23729.96678
NODDeveloping tillers at six leaf stage, 3rd internode0.3181980.3378470.6519411.20151
CAR5Developing grain, bracts removed (5 DPA)14.164714.517715.87813.1133
CAR15Developing grain, bracts removed (15 DPA)4.957324.930825.1794310.348



CDS Structure of MLOC_61052






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61052.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374185NoneNoneNoneNone
MLOC_61052.6CUST_4394_PI427708080AvailableAvailablecontig_45044 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g28960.2 +2 0.0 1418 705/818 (86%) 13103.m03324 protein DNA-directed RNA polymerase subunit, putative, expressed
TAIR PP10 AT5G45140.1 +2 0.0 1077 540/796 (68%) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161