MLOC_61000 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.74345.594934.805539.5418
LEAShoots from the seedlings (10 cm shoot stage)12.742926.59115.5349813.2086
INF1Young developing inflorescences (5mm)0.1627050.2452140.1422140.170443
INF2Developing inflorescences (1-1.5 cm)0.162170.2086190.2244780.228839
ROORoots from the seedlings (10 cm shoot stage)64.337753.044764.181571.5871
NODDeveloping tillers at six leaf stage, 3rd internode5.377857.230121.0670122.4675
CAR5Developing grain, bracts removed (5 DPA)24.748623.615126.152125.2378
CAR15Developing grain, bracts removed (15 DPA)6.667485.1702712.26417.7004



CDS Structure of MLOC_61000






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61000.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61000.2CUST_14221_PI427708080AvailableAvailablecontig_44988 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g40590.3 -2 0.0 927 457/658 (69%) 13111.m04022 protein DUF1399 containing protein, putative, expressed
TAIR PP10 AT4G37900.1 -2 8e-167 518 294/654 (45%) Protein of unknown function (duplicated DUF1399) | chr4:17821737-17824445 REVERSE LENGTH=787