MLOC_60978 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7551283.485380.6244462.07237
LEAShoots from the seedlings (10 cm shoot stage)5.873728.9278530.187510.8876
INF1Young developing inflorescences (5mm)8.682654.694062.87744.76071
INF2Developing inflorescences (1-1.5 cm)0.374680.2596810.1335790.306667
ROORoots from the seedlings (10 cm shoot stage)1.130291.592513.487631.84734
NODDeveloping tillers at six leaf stage, 3rd internode2.261710.3756030.2832630.663207
CAR5Developing grain, bracts removed (5 DPA)0.7170691.052650.3175390.718328
CAR15Developing grain, bracts removed (15 DPA)0.0677290.04001080.0483450.13892



CDS Structure of MLOC_60978






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60978.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355547NoneNoneNoneNone
MLOC_60978.1CUST_4381_PI427708080AvailableAvailablecontig_44960 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08160.1 +2 3e-55 183 89/113 (79%) 13107.m00805 protein early light-induced protein, chloroplast precursor, putative, expressed
TAIR PP10 AT3G22840.1 +2 4e-40 143 73/109 (67%) | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family protein | chr3:8084628-8085445 REVERSE LENGTH=195