MLOC_60953 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.517829.915529.345223.7341
LEAShoots from the seedlings (10 cm shoot stage)29.560830.401626.429420.4227
INF1Young developing inflorescences (5mm)46.728742.542748.602833.0583
INF2Developing inflorescences (1-1.5 cm)45.771644.460951.06642.0846
ROORoots from the seedlings (10 cm shoot stage)27.071337.371757.389335.3507
NODDeveloping tillers at six leaf stage, 3rd internode24.80766.5111419.484921.3169
CAR5Developing grain, bracts removed (5 DPA)28.820734.01134.361925.1547
CAR15Developing grain, bracts removed (15 DPA)9.770479.088710.811219.9879



CDS Structure of MLOC_60953






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60953.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60953.1CUST_12871_PI427708083AvailableAvailablecontig_44935 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g57790.2 -1 3e-27 108 48/50 (96%) 13103.m06340 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT2G02760.1 -1 2e-26 105 47/50 (94%) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152