MLOC_60939 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.166013.23692.947522.65025
LEAShoots from the seedlings (10 cm shoot stage)4.308793.112574.281953.11552
INF1Young developing inflorescences (5mm)4.129684.747465.823013.72425
INF2Developing inflorescences (1-1.5 cm)7.88246.615247.418637.24767
ROORoots from the seedlings (10 cm shoot stage)2.971822.856533.088823.12443
NODDeveloping tillers at six leaf stage, 3rd internode3.47884.55964.529412.5768
CAR5Developing grain, bracts removed (5 DPA)4.174613.811364.545383.63892
CAR15Developing grain, bracts removed (15 DPA)1.98741.198021.893393.51541



CDS Structure of MLOC_60939






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60939.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60939.3CUST_8342_PI427708083AvailableAvailablecontig_44920 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51140.1 +2 5e-43 107 56/71 (79%) 13103.m05559 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT1G64790.2 +1 7e-38 123 62/90 (69%) | Symbols: ILA | ILITYHIA | chr1:24065232-24083403 REVERSE LENGTH=2696