- Predicted Gene MLOC_60936
MLOC_60936 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 12.0383 | 13.0142 | 13.3379 | 12.1559 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.3366 | 11.9079 | 13.0735 | 9.89227 |
INF1 | Young developing inflorescences (5mm) | 17.239 | 17.6214 | 19.697 | 14.343 |
INF2 | Developing inflorescences (1-1.5 cm) | 21.5798 | 23.0969 | 24.1999 | 23.0732 |
ROO | Roots from the seedlings (10 cm shoot stage) | 8.59187 | 14.6923 | 14.5388 | 16.1342 |
NOD | Developing tillers at six leaf stage, 3rd internode | 8.02766 | 8.86348 | 9.38313 | 30.6132 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.1427 | 11.6484 | 12.3833 | 10.5046 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.56556 | 3.72308 | 4.2955 | 7.87503 |
CDS Structure of MLOC_60936
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_60936.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g33480.1 |
-3 |
0.0 |
687 |
347/412 (84%) |
13104.m03237 protein histone deacetylase, putative, expressed |
TAIR PP10 |
AT3G44680.1 |
-3 |
0.0 |
717 |
335/412 (81%) |
| Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426 |