MLOC_60936 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.038313.014213.337912.1559
LEAShoots from the seedlings (10 cm shoot stage)10.336611.907913.07359.89227
INF1Young developing inflorescences (5mm)17.23917.621419.69714.343
INF2Developing inflorescences (1-1.5 cm)21.579823.096924.199923.0732
ROORoots from the seedlings (10 cm shoot stage)8.5918714.692314.538816.1342
NODDeveloping tillers at six leaf stage, 3rd internode8.027668.863489.3831330.6132
CAR5Developing grain, bracts removed (5 DPA)11.142711.648412.383310.5046
CAR15Developing grain, bracts removed (15 DPA)3.565563.723084.29557.87503



CDS Structure of MLOC_60936






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60936.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60936.4CUST_14209_PI427708080AvailableAvailablecontig_44918 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g33480.1 -3 0.0 687 347/412 (84%) 13104.m03237 protein histone deacetylase, putative, expressed
TAIR PP10 AT3G44680.1 -3 0.0 717 335/412 (81%) | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426