MLOC_60915 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4263440.6298530.1253050.400307
LEAShoots from the seedlings (10 cm shoot stage)5.545038.933477.152455.10874
INF1Young developing inflorescences (5mm)0.084853900.5220250.176002
INF2Developing inflorescences (1-1.5 cm)0.065133500.09217240.110004
ROORoots from the seedlings (10 cm shoot stage)1.780192.485942.014192.33812
NODDeveloping tillers at six leaf stage, 3rd internode00.008700100.0720659
CAR5Developing grain, bracts removed (5 DPA)1.215012.65952.42861.56301
CAR15Developing grain, bracts removed (15 DPA)10.85429.499335.0653316.1839



CDS Structure of MLOC_60915






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60915.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60915.1NoneAvailableAvailablecontig_44897 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g28240.1 -3 3e-38 144 72/112 (64%) 13108.m02917 protein carotenoid cleavage dioxygenase, putative
TAIR PP10 AT3G63520.1 -3 1e-13 71 36/75 (48%) | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538