MLOC_60848 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.612793.694373.560884.08753
LEAShoots from the seedlings (10 cm shoot stage)5.216438.0943812.3686.95018
INF1Young developing inflorescences (5mm)0.9337591.29510.6368520.906032
INF2Developing inflorescences (1-1.5 cm)1.212690.8345420.5888631.075
ROORoots from the seedlings (10 cm shoot stage)27.546315.016515.588518.8419
NODDeveloping tillers at six leaf stage, 3rd internode11.961720.076722.37253.6343
CAR5Developing grain, bracts removed (5 DPA)0.9740680.7320240.7535450.87559
CAR15Developing grain, bracts removed (15 DPA)0.3277260.407510.1181940.828842



CDS Structure of MLOC_60848






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60848.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60848.4CUST_14196_PI427708080AvailableAvailablecontig_44850 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g12860.1 +2 1e-73 242 175/266 (66%) 13103.m01477 protein homeobox associated leucine zipper, putative, expressed
TAIR PP10 AT5G06710.1 +2 4e-48 173 120/218 (55%) | Symbols: HAT14 | homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336