MLOC_60786 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.490557.44394.803295.2057
LEAShoots from the seedlings (10 cm shoot stage)4.228741.748784.212372.88128
INF1Young developing inflorescences (5mm)10.81868.5040610.43547.42736
INF2Developing inflorescences (1-1.5 cm)10.795812.48889.5376711.2243
ROORoots from the seedlings (10 cm shoot stage)0.4997764.73024.623114.46635
NODDeveloping tillers at six leaf stage, 3rd internode1.339112.662793.316718.72449
CAR5Developing grain, bracts removed (5 DPA)6.342025.158816.6295.04132
CAR15Developing grain, bracts removed (15 DPA)2.837292.036682.755425.3741



CDS Structure of MLOC_60786






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60786.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60786.1CUST_8326_PI427708083AvailableAvailablecontig_44777 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05810.2 +3 6e-63 210 106/131 (81%) 13105.m00616 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT5G27680.1 +3 1e-46 164 82/128 (64%) | Symbols: RECQSIM | RECQ helicase SIM | chr5:9794244-9798637 REVERSE LENGTH=858