MLOC_60780 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.078184.901615.8354.48827
LEAShoots from the seedlings (10 cm shoot stage)4.521981.06421.951932.01409
INF1Young developing inflorescences (5mm)5.607717.094917.881034.3906
INF2Developing inflorescences (1-1.5 cm)6.094637.080496.643145.84766
ROORoots from the seedlings (10 cm shoot stage)3.365133.4683.730173.28365
NODDeveloping tillers at six leaf stage, 3rd internode3.112472.754772.235817.39508
CAR5Developing grain, bracts removed (5 DPA)5.892176.222555.231274.40629
CAR15Developing grain, bracts removed (15 DPA)1.173480.963731.512552.07739



CDS Structure of MLOC_60780






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60780.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60780.1CUST_14183_PI427708080AvailableAvailablecontig_44773 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g41590.3 +1 1e-171 503 239/267 (90%) 13106.m04343 protein YIF1B, putative, expressed
TAIR PP10 AT3G59500.1 +1 3e-120 369 174/256 (68%) Integral membrane HRF1 family protein | chr3:21987110-21988169 FORWARD LENGTH=269