MLOC_60773 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains41.596633.165234.758932.3211
LEAShoots from the seedlings (10 cm shoot stage)38.430859.37744.658734.3931
INF1Young developing inflorescences (5mm)21.770327.83140.407223.4141
INF2Developing inflorescences (1-1.5 cm)29.112329.208228.48529.6111
ROORoots from the seedlings (10 cm shoot stage)196.46384.526689.1182100.921
NODDeveloping tillers at six leaf stage, 3rd internode95.0262106.986146.481277.5
CAR5Developing grain, bracts removed (5 DPA)27.826234.399432.511127.9748
CAR15Developing grain, bracts removed (15 DPA)43.240842.507239.498495.4856



CDS Structure of MLOC_60773






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60773.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376782NoneNoneNoneNone
MLOC_60773.1CUST_18215_PI427708080AvailableAvailablecontig_44763 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g50970.1 -1 1e-30 120 70/88 (80%) 13104.m05182 protein seed specific protein Bn15D1B, putative, expressed
TAIR PP10 AT5G17165.1 -1 1e-13 71 42/92 (46%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5643143-5647702 REVERSE LENGTH=116