MLOC_60643 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.276920.767319.662719.4513
LEAShoots from the seedlings (10 cm shoot stage)8.982584.605975.198975.053
INF1Young developing inflorescences (5mm)11.395512.38211.47569.35648
INF2Developing inflorescences (1-1.5 cm)9.8979210.97429.6239610.4073
ROORoots from the seedlings (10 cm shoot stage)18.39612.846311.765614.534
NODDeveloping tillers at six leaf stage, 3rd internode4.213934.436223.5400312.7549
CAR5Developing grain, bracts removed (5 DPA)10.961210.64648.851389.0835
CAR15Developing grain, bracts removed (15 DPA)1.853051.186681.511933.32991



CDS Structure of MLOC_60643






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60643.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361410NoneNoneNoneNone
MLOC_60643.1CUST_4321_PI427708080AvailableAvailablecontig_44619 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39220.1 -3 0.0 585 297/335 (89%) 13109.m03927 protein delta14-sterol reductase, putative, expressed
TAIR PP10 AT3G52940.1 -3 4e-168 487 241/335 (72%) | Symbols: FK, HYD2, ELL1 | Ergosterol biosynthesis ERG4/ERG24 family | chr3:19630369-19633112 REVERSE LENGTH=369