MLOC_60617 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.0538712.310511.51311.4682
LEAShoots from the seedlings (10 cm shoot stage)30.358338.075736.347929.8751
INF1Young developing inflorescences (5mm)6.065694.169123.857294.33678
INF2Developing inflorescences (1-1.5 cm)3.632495.635384.296385.51348
ROORoots from the seedlings (10 cm shoot stage)2.157873.61233.434914.1315
NODDeveloping tillers at six leaf stage, 3rd internode0.3107760.2652750.2365560.750231
CAR5Developing grain, bracts removed (5 DPA)21.620521.741420.500822.4295
CAR15Developing grain, bracts removed (15 DPA)0.8608411.056551.014362.54046



CDS Structure of MLOC_60617






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60617.9
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355380NoneNoneNoneNone
MLOC_60617.9CUST_4316_PI427708080AvailableAvailablecontig_44587 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51620.1 -1 0.0 1170 787/1135 (69%) 13105.m05571 protein expressed protein
TAIR PP10 AT3G48200.1 -1 0.0 711 493/1106 (45%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:17832949-17837371 REVERSE LENGTH=1088