MLOC_60552 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.94562.360762.482672.51111
LEAShoots from the seedlings (10 cm shoot stage)3.887692.235452.732592.80064
INF1Young developing inflorescences (5mm)3.748394.343545.324944.07441
INF2Developing inflorescences (1-1.5 cm)6.683897.341496.927748.30534
ROORoots from the seedlings (10 cm shoot stage)1.432811.824471.415862.42417
NODDeveloping tillers at six leaf stage, 3rd internode5.094536.982154.5870724.4406
CAR5Developing grain, bracts removed (5 DPA)4.882725.335885.014085.448
CAR15Developing grain, bracts removed (15 DPA)0.8274280.7770890.5577551.89682



CDS Structure of MLOC_60552






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60552.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359150NoneNoneNoneNone
MLOC_60552.4CUST_4308_PI427708080AvailableAvailablecontig_44513 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g39260.1 -3 0.0 611 376/701 (54%) 13101.m04007 protein OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
TAIR PP10 AT2G26140.1 -3 0.0 596 372/659 (56%) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717