MLOC_60551 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.034012600.0748661
LEAShoots from the seedlings (10 cm shoot stage)0.05954370.03124330.05453850.0467735
INF1Young developing inflorescences (5mm)0.01570820.01671210.0398970.0277574
INF2Developing inflorescences (1-1.5 cm)0.06047210.027839300.0612045
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.2251730.3534860.05859711.05677
CAR5Developing grain, bracts removed (5 DPA)0.1402120.09691520.09330240.113346
CAR15Developing grain, bracts removed (15 DPA)0.3796110.2470110.1453140.69492



CDS Structure of MLOC_60551






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60551.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60551.2CUST_14146_PI427708080AvailableAvailablecontig_44513 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g39260.1 -3 3e-166 504 309/473 (65%) 13101.m04007 protein OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
TAIR PP10 AT2G26140.1 -3 1e-163 497 316/511 (62%) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717