MLOC_60545 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.781894.016863.364123.35343
LEAShoots from the seedlings (10 cm shoot stage)3.626972.674733.996062.87531
INF1Young developing inflorescences (5mm)8.456159.403198.370517.14226
INF2Developing inflorescences (1-1.5 cm)12.648412.486411.041612.5991
ROORoots from the seedlings (10 cm shoot stage)3.35274.546293.764844.88535
NODDeveloping tillers at six leaf stage, 3rd internode1.388492.26051.936546.6537
CAR5Developing grain, bracts removed (5 DPA)8.365639.043499.593258.07545
CAR15Developing grain, bracts removed (15 DPA)5.818275.958724.78712.188



CDS Structure of MLOC_60545






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60545.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367701NoneNoneNoneNone
MLOC_60545.2CUST_18212_PI427708080AvailableAvailablecontig_44460 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50980.1 -2 0.0 982 513/831 (62%) 13103.m05541 protein ATSIZ1/SIZ1, putative, expressed
TAIR PP10 AT5G60410.3 -2 0.0 631 339/698 (49%) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300300 FORWARD LENGTH=832