MLOC_60540 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.422432.807136.378634.6625
LEAShoots from the seedlings (10 cm shoot stage)43.661248.337635.258935.6155
INF1Young developing inflorescences (5mm)13.311511.208712.793810.9808
INF2Developing inflorescences (1-1.5 cm)10.812813.494811.549214.1077
ROORoots from the seedlings (10 cm shoot stage)80.093378.613160.84492.6835
NODDeveloping tillers at six leaf stage, 3rd internode166.911203.704185.576642.855
CAR5Developing grain, bracts removed (5 DPA)23.719223.806825.290224.6954
CAR15Developing grain, bracts removed (15 DPA)6.551126.598086.9085116.3841



CDS Structure of MLOC_60540






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60540.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248442.1NoneNoneNoneNone
MLOC_60540.2CUST_4304_PI427708080AvailableAvailablecontig_44502 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43420.1 +2 2e-161 465 233/285 (82%) 13101.m04486 protein expressed protein
TAIR PP10 AT2G46225.1 +2 5e-83 263 144/283 (51%) | Symbols: ABIL1 | ABI-1-like 1 | chr2:18982113-18984074 FORWARD LENGTH=298