MLOC_60510 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.208021.417711.2141.00063
LEAShoots from the seedlings (10 cm shoot stage)24.970434.861939.682521.353
INF1Young developing inflorescences (5mm)5.854567.494827.560644.29906
INF2Developing inflorescences (1-1.5 cm)4.236555.065974.764954.01308
ROORoots from the seedlings (10 cm shoot stage)0.6833741.669322.06911.28443
NODDeveloping tillers at six leaf stage, 3rd internode11.221613.503814.06135.2094
CAR5Developing grain, bracts removed (5 DPA)1.545932.009661.672721.2809
CAR15Developing grain, bracts removed (15 DPA)0.4659070.7894140.6167060.987137



CDS Structure of MLOC_60510






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60510.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60510.1NoneAvailableAvailablecontig_44476 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g17830.1 +2 3e-31 106 59/130 (45%) 13105.m01882 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT1G66330.2 -1 4e-23 102 61/94 (65%) senescence-associated family protein | chr1:24729880-24732144 REVERSE LENGTH=417