MLOC_60506 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains163.108117.95113.338124.589
LEAShoots from the seedlings (10 cm shoot stage)65.562439.567537.750738.6717
INF1Young developing inflorescences (5mm)123.624114.525120.21699.5495
INF2Developing inflorescences (1-1.5 cm)88.016287.084786.417692.057
ROORoots from the seedlings (10 cm shoot stage)103.69693.5826114.678110.817
NODDeveloping tillers at six leaf stage, 3rd internode17.458216.005228.758850.3481
CAR5Developing grain, bracts removed (5 DPA)55.335957.75260.726153.7592
CAR15Developing grain, bracts removed (15 DPA)23.5324.354925.284154.5691



CDS Structure of MLOC_60506






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60506.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60506.1CUST_8289_PI427708083AvailableAvailablecontig_44473 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g22460.2 -2 2e-33 120 57/65 (88%) 13103.m02704 protein expressed protein
TAIR PP10 AT5G27700.1 -2 4e-28 105 50/71 (70%) Ribosomal protein S21e | chr5:9807541-9808048 REVERSE LENGTH=82