MLOC_60505 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.419071.163310.9269221.19843
LEAShoots from the seedlings (10 cm shoot stage)00.2524820.1456920.182259
INF1Young developing inflorescences (5mm)0.3450120.538940.4786250.398701
INF2Developing inflorescences (1-1.5 cm)0.2340990.3113690.2327110.299161
ROORoots from the seedlings (10 cm shoot stage)0.4838640.561750.2909050.650293
NODDeveloping tillers at six leaf stage, 3rd internode0.4236930.3028970.09794260.900958
CAR5Developing grain, bracts removed (5 DPA)0.3996310.5859670.5290450.501733
CAR15Developing grain, bracts removed (15 DPA)0.070360500.03447080.142103



CDS Structure of MLOC_60505






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60505.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60505.1CUST_14141_PI427708080AvailableAvailablecontig_44473 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47490.2 -2 0.0 1006 497/588 (85%) 13107.m05056 protein OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed
TAIR PP10 AT2G47750.1 -2 0.0 743 370/583 (63%) | Symbols: GH3.9 | putative indole-3-acetic acid-amido synthetase GH3.9 | chr2:19560307-19562974 REVERSE LENGTH=585