MLOC_60493 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.330523.737826.125124.0309
LEAShoots from the seedlings (10 cm shoot stage)13.90187.7590510.05358.25321
INF1Young developing inflorescences (5mm)29.351524.375422.693920.0311
INF2Developing inflorescences (1-1.5 cm)19.123321.9821.902920.3525
ROORoots from the seedlings (10 cm shoot stage)16.786817.724820.269318.4498
NODDeveloping tillers at six leaf stage, 3rd internode8.291385.770925.9037615.8718
CAR5Developing grain, bracts removed (5 DPA)27.343428.509727.317923.8248
CAR15Developing grain, bracts removed (15 DPA)5.650265.963815.2113911.9034



CDS Structure of MLOC_60493






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60493.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252695.1NoneNoneNoneNone
MLOC_60493.1CUST_18210_PI427708080AvailableAvailablecontig_44460 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g32550.1 +2 1e-66 210 106/114 (93%) 13104.m03118 protein defender against cell death 1, putative, expressed
TAIR PP10 AT1G32210.1 +2 3e-58 187 94/108 (87%) | Symbols: ATDAD1 | Defender against death (DAD family) protein | chr1:11606047-11607652 REVERSE LENGTH=115