MLOC_60492 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains50.019939.839442.523748.2522
LEAShoots from the seedlings (10 cm shoot stage)17.30671.653362.000865.66286
INF1Young developing inflorescences (5mm)28.55434.571425.146730.5042
INF2Developing inflorescences (1-1.5 cm)16.502729.798921.901132.5228
ROORoots from the seedlings (10 cm shoot stage)16.523816.397413.827321.1373
NODDeveloping tillers at six leaf stage, 3rd internode6.086892.132141.189034.9624
CAR5Developing grain, bracts removed (5 DPA)19.073825.791821.09827.6873
CAR15Developing grain, bracts removed (15 DPA)0.9251630.2888080.6364581.64609



CDS Structure of MLOC_60492






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60492.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374098NoneNoneNoneNone
MLOC_60492.3CUST_18209_PI427708080AvailableAvailablecontig_44270 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g45990.2 +1 0.0 522 281/355 (79%) 13106.m04856 protein patellin-5, putative, expressed
TAIR PP10 AT1G30690.2 +1 8e-113 346 185/347 (53%) Sec14p-like phosphatidylinositol transfer family protein | chr1:10888284-10890085 FORWARD LENGTH=540