MLOC_60488 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.013045.037495.342012.74423
LEAShoots from the seedlings (10 cm shoot stage)7.566936.946435.874224.09038
INF1Young developing inflorescences (5mm)7.281915.357535.997233.5542
INF2Developing inflorescences (1-1.5 cm)2.596092.140224.495592.16816
ROORoots from the seedlings (10 cm shoot stage)3.3325810.222810.45316.47491
NODDeveloping tillers at six leaf stage, 3rd internode6.157283.474354.791938.53508
CAR5Developing grain, bracts removed (5 DPA)2.894572.204492.0461.60366
CAR15Developing grain, bracts removed (15 DPA)2.12312.596662.50863.8956



CDS Structure of MLOC_60488






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60488.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60488.1NoneAvailableAvailablecontig_44457 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g03570.1 -2 0.0 587 321/602 (53%) 13110.m00269 protein RGH1A, putative, expressed
TAIR PP10 AT3G46730.1 -2 5e-54 206 159/530 (30%) NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847