MLOC_60480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.12629.386779.9971710.7449
LEAShoots from the seedlings (10 cm shoot stage)13.266615.047914.634312.4183
INF1Young developing inflorescences (5mm)0.791060.5785161.122840.781172
INF2Developing inflorescences (1-1.5 cm)0.3880280.4295420.4526410.533131
ROORoots from the seedlings (10 cm shoot stage)10.45539.669326.1085111.5686
NODDeveloping tillers at six leaf stage, 3rd internode10.38979.810796.8512427.8422
CAR5Developing grain, bracts removed (5 DPA)39.148331.01725.907635.4514
CAR15Developing grain, bracts removed (15 DPA)0.1591190.08190930.3058120.453274



CDS Structure of MLOC_60480






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60480.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251087.1NoneNoneNoneNone
MLOC_60480.2CUST_4296_PI427708080AvailableAvailablecontig_44449 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g27590.1 +3 0.0 669 348/437 (80%) 13103.m03230 protein OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT2G27920.1 +3 1e-166 486 255/430 (59%) | Symbols: SCPL51 | serine carboxypeptidase-like 51 | chr2:11885777-11889043 REVERSE LENGTH=461