MLOC_60410 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3526460.518850.3323860.393879
LEAShoots from the seedlings (10 cm shoot stage)0.4961621.364022.237281.04377
INF1Young developing inflorescences (5mm)1.055870.9270161.037520.791413
INF2Developing inflorescences (1-1.5 cm)0.7882970.7863430.9474030.843056
ROORoots from the seedlings (10 cm shoot stage)0.266860.4108490.212250.387972
NODDeveloping tillers at six leaf stage, 3rd internode0.0540220.05225750.1903630.231215
CAR5Developing grain, bracts removed (5 DPA)16.552622.373323.8518.486
CAR15Developing grain, bracts removed (15 DPA)25.777422.048726.118352.7459



CDS Structure of MLOC_60410






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60410.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373487NoneNoneNoneNone
MLOC_60410.5CUST_4284_PI427708080AvailableAvailablecontig_44355 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g21470.2 -2 0.0 801 423/551 (77%) 13110.m01778 protein pentatricopeptide, putative, expressed
TAIR PP10 AT2G01390.1 -2 7e-122 397 222/530 (42%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:172256-174137 FORWARD LENGTH=577