MLOC_60395 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.908849.43619.204110.1041
LEAShoots from the seedlings (10 cm shoot stage)8.875674.574495.907345.89442
INF1Young developing inflorescences (5mm)9.9653411.086613.211610.0501
INF2Developing inflorescences (1-1.5 cm)18.183216.110515.443819.2795
ROORoots from the seedlings (10 cm shoot stage)5.839859.281737.3983611.6639
NODDeveloping tillers at six leaf stage, 3rd internode13.011413.855716.90851.3044
CAR5Developing grain, bracts removed (5 DPA)10.46549.8395510.092410.6054
CAR15Developing grain, bracts removed (15 DPA)2.873152.904113.032897.1767



CDS Structure of MLOC_60395






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60395.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367225NoneNoneNoneNone
MLOC_60395.3CUST_4283_PI427708080AvailableAvailablecontig_44344 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g02710.1 +3 0.0 659 329/397 (83%) 13102.m00216 protein zinc carboxypeptidase family protein, putative, expressed
TAIR PP10 AT5G42320.1 +3 3e-141 419 219/378 (58%) Zn-dependent exopeptidases superfamily protein | chr5:16918651-16920845 REVERSE LENGTH=379