MLOC_60371 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.893252.968922.899063.09715
LEAShoots from the seedlings (10 cm shoot stage)0.970380.3606020.2125120.470514
INF1Young developing inflorescences (5mm)16.428619.824618.322116.8289
INF2Developing inflorescences (1-1.5 cm)19.95124.143418.218725.939
ROORoots from the seedlings (10 cm shoot stage)0.7408531.49731.182811.92437
NODDeveloping tillers at six leaf stage, 3rd internode0.2139990.467510.9831582.06807
CAR5Developing grain, bracts removed (5 DPA)2.24892.155812.875052.62693
CAR15Developing grain, bracts removed (15 DPA)0.2737390.2994340.4218680.808591



CDS Structure of MLOC_60371






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60371.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375697NoneNoneNoneNone
MLOC_60371.4CUST_4279_PI427708080AvailableAvailablecontig_44321 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02580.1 +1 9e-139 434 285/519 (55%) 13105.m00228 protein expressed protein
TAIR PP10 AT3G53540.1 +1 8e-31 131 230/971 (24%) unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | chr3:19846805-19850670 REVERSE LENGTH=924