- Predicted Gene MLOC_60371
MLOC_60371 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_60371_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.89325 | 2.96892 | 2.89906 | 3.09715 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.97038 | 0.360602 | 0.212512 | 0.470514 |
INF1 | Young developing inflorescences (5mm) | 16.4286 | 19.8246 | 18.3221 | 16.8289 |
INF2 | Developing inflorescences (1-1.5 cm) | 19.951 | 24.1434 | 18.2187 | 25.939 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.740853 | 1.4973 | 1.18281 | 1.92437 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.213999 | 0.46751 | 0.983158 | 2.06807 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.2489 | 2.15581 | 2.87505 | 2.62693 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.273739 | 0.299434 | 0.421868 | 0.808591 |
CDS Structure of MLOC_60371
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_60371.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g02580.1 |
+1 |
9e-139 |
434 |
285/519 (55%) |
13105.m00228 protein expressed protein |
TAIR PP10 |
AT3G53540.1 |
+1 |
8e-31 |
131 |
230/971 (24%) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | chr3:19846805-19850670 REVERSE LENGTH=924 |