MLOC_60367 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6845821.194181.163931.12807
LEAShoots from the seedlings (10 cm shoot stage)0.09083400.09551980.0868985
INF1Young developing inflorescences (5mm)4.602413.827863.019373.53023
INF2Developing inflorescences (1-1.5 cm)2.997493.495613.312413.8833
ROORoots from the seedlings (10 cm shoot stage)0.2277710.4390970.3227310.513194
NODDeveloping tillers at six leaf stage, 3rd internode0.04055750.017716900.0835462
CAR5Developing grain, bracts removed (5 DPA)0.4436350.4639740.6842270.561271
CAR15Developing grain, bracts removed (15 DPA)0.049097500.1426630.263868



CDS Structure of MLOC_60367






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60367.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_60367.1CUST_14123_PI427708080AvailableAvailablecontig_44319 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46040.1 +3 2e-60 196 117/234 (50%) 13101.m04726 protein bromodomain domain containing protein, expressed
TAIR PP10 AT1G73150.1 +3 3e-25 104 51/98 (52%) | Symbols: GTE3 | global transcription factor group E3 | chr1:27504327-27505996 REVERSE LENGTH=461