morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_60356

Gene IDMLOC_60356
Source Contig contig_443084

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_60356 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.887051	3.01395	1.19029	1.27143
LEA	Shoots from the seedlings (10 cm shoot stage)	2.78722	4.2298	1.1873	1.65285
INF1	Young developing inflorescences (5mm)	4.64901	4.28541	4.32877	2.56953
INF2	Developing inflorescences (1-1.5 cm)	3.5702	2.93038	2.1596	2.53785
ROO	Roots from the seedlings (10 cm shoot stage)	0	1.80535	0	3.22813
NOD	Developing tillers at six leaf stage, 3rd internode	0.681556	2.21048	1.03224	4.15251
CAR5	Developing grain, bracts removed (5 DPA)	1.39398	2.69217	1.57137	1.33235
CAR15	Developing grain, bracts removed (15 DPA)	0.251678	0.520021	1.10605	0.835548

CDS Structure of MLOC_60356

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK368916

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK368916	CUST_14283_PI427708083	None	None	None
MLOC_1149.1	None	Available	None	contig_1097915 (Not mapped)
MLOC_1271.1	None	Available	None	contig_1110846 (Not mapped)
MLOC_2547.1	None	Available	None	contig_1227034 (Not mapped)
MLOC_28954.1	None	Available	None	contig_1962374 (Mapped)
MLOC_33212.1	None	Available	None	contig_2353928 (Mapped)
MLOC_35592.1	None	Available	None	contig_2503541 (Not mapped)
MLOC_48232.1	None	Available	None	contig_319905 (Mapped)
MLOC_50589.1	None	Available	None	contig_362563 (Mapped)
MLOC_60356.1	None	Available	Available	contig_443084 (Not mapped)
MLOC_60373.1	None	Available	None	contig_443225 (Not mapped)
MLOC_67306.1	None	Available	None	contig_528617 (Not mapped)
MLOC_75404.1	None	Available	None	contig_678388 (Not mapped)
MLOC_78035.1	None	Available	None	contig_783693 (Not mapped)
MLOC_78083.1	None	Available	None	contig_785843 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-