MLOC_60310 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains83.359774.692177.801880.8071
LEAShoots from the seedlings (10 cm shoot stage)71.840733.641843.783743.4051
INF1Young developing inflorescences (5mm)50.059449.367644.709140.8268
INF2Developing inflorescences (1-1.5 cm)32.33734.383834.170637.4976
ROORoots from the seedlings (10 cm shoot stage)47.971166.164954.357377.374
NODDeveloping tillers at six leaf stage, 3rd internode118.82887.003556.0851279.262
CAR5Developing grain, bracts removed (5 DPA)59.074660.747762.646760.7599
CAR15Developing grain, bracts removed (15 DPA)6.344916.196726.7535514.6461



CDS Structure of MLOC_60310






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_60310.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372189NoneNoneNoneNone
MLOC_60310.1CUST_18207_PI427708080AvailableAvailablecontig_44270 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g63710.1 +1 0.0 611 341/414 (82%) 13103.m07065 protein GTPase-activating protein, putative, expressed
TAIR PP10 AT5G46750.1 +1 7e-127 383 231/418 (55%) | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969950-18971817 REVERSE LENGTH=402